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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.5W0HK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 145aa MW: 17071.9 Da PI: 10.908 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4e-13 | 84 | 121 | 8 | 47 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 E++ +d+++ql ++ W+ I ++++ gRt++++k++w+++ Aradu.5W0HK 84 EEKMVIDLHAQLRNR-WSMITSHLP-GRTDNEIKNHWNTH 121 8999***********.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-6 | 34 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.62E-13 | 37 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-10 | 39 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 70 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.707 | 72 | 126 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.8E-10 | 84 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-8 | 84 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
RKQSVERNRE DKDSKFRLIS LITSLRFRFS PTTLSVGLKK GPWTAEEDKK LINFILNNGQ 60 CVVKVALVDN LRPYVKRGLL LKYEEKMVID LHAQLRNRWS MITSHLPGRT DNEIKNHWNT 120 HIKKKLKKLR IDPVTYKPFS NNTTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-16 | 38 | 126 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234300.2 | 1e-52 | myb-related transcription factor | ||||
Refseq | XP_006364618.1 | 2e-52 | PREDICTED: protein ODORANT1 | ||||
Refseq | XP_015057255.1 | 2e-52 | PREDICTED: protein ODORANT1 | ||||
Swissprot | Q50EX6 | 2e-44 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | Q40173 | 7e-53 | Q40173_SOLLC; Myb-related transcription factor | ||||
TrEMBL | K4D5R2 | 2e-52 | K4D5R2_SOLLC; Uncharacterized protein | ||||
TrEMBL | M1B9Y8 | 2e-52 | M1B9Y8_SOLTU; Uncharacterized protein | ||||
TrEMBL | A0A0B2QDS7 | 3e-52 | A0A0B2QDS7_GLYSO; Protein ODORANT1 | ||||
TrEMBL | I1LMB7 | 3e-52 | I1LMB7_SOYBN; Uncharacterized protein | ||||
STRING | Solyc11g011050.1.1 | 4e-52 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400040462 | 5e-52 | (Solanum tuberosum) | ||||
STRING | GLYMA11G33620.1 | 9e-52 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 3e-52 | myb domain protein 20 |